References
Akyol, Turgut Yigit. 2019. RVenn: Set Operations for Many Sets.
https://CRAN.R-project.org/package=RVenn.
Chang, Chang-Yu, Djordje Bajić, Jean C. C. Vila, Sylvie Estrela, and
Alvaro Sanchez. 2023. “Emergent Coexistence in Multispecies
Microbial Communities.” Science 381 (6655): 343–48. https://doi.org/10.1126/science.adg0727.
Chen, Hanbo. 2022. VennDiagram: Generate High-Resolution Venn and
Euler Plots. https://CRAN.R-project.org/package=VennDiagram.
“Csho33/Bacteria-ID: Source Code and Demos for "Rapid
Identification of Pathogenic Bacteria Using Raman Spectroscopy and Deep
Learning".” n.d. https://github.com/csho33/bacteria-ID.
Dusa, Adrian. 2024. Venn: Draw Venn Diagrams. https://github.com/dusadrian/venn.
Gao, Chun-Hui, Hui Cao, Peng Cai, and Søren J. Sørensen. 2021.
“The Initial Inoculation Ratio Regulates Bacterial Coculture
Interactions and Metabolic Capacity.” ISME Journal 15
(1): 29–40. https://doi.org/10.1038/s41396-020-00751-7.
Gao, Chun-Hui, Hui Cao, Feng Ju, Ke-Qing Xiao, Peng Cai, Yichao Wu, and
Qiaoyun Huang. 2021. “Emergent Transcriptional Adaption
Facilitates Convergent Succession Within a Synthetic Community.”
ISME Communications 1 (1): 46. https://doi.org/10.1038/s43705-021-00049-5.
Gao, Chun-Hui, and Adrian Dusa. 2024. ggVennDiagram: A Ggplot2
Implement of Venn Diagram. https://github.com/gaospecial/ggVennDiagram.
Ho, Chi-Sing, Neal Jean, Catherine A. Hogan, Lena Blackmon, Stefanie S.
Jeffrey, Mark Holodniy, Niaz Banaei, Amr A. E. Saleh, Stefano Ermon, and
Jennifer Dionne. 2019. “Rapid Identification of Pathogenic
Bacteria Using Raman Spectroscopy and Deep Learning.” Nature
Communications 10 (1): 4927. https://doi.org/10.1038/s41467-019-12898-9.
Knuth, Donald E. 1984. “Literate Programming.” Comput.
J. 27 (2): 97–111. https://doi.org/10.1093/comjnl/27.2.97.
Larsson, Johan. 2024. Eulerr: Area-Proportional Euler and Venn
Diagrams with Ellipses. https://github.com/jolars/eulerr.
Warnes, Gregory R., Ben Bolker, Lodewijk Bonebakker, Robert Gentleman,
Wolfgang Huber, Andy Liaw, Thomas Lumley, et al. 2024. Gplots:
Various r Programming Tools for Plotting Data. https://github.com/talgalili/gplots.
Wilkinson, Lee. 2024. Venneuler: Venn and Euler Diagrams. https://www.rforge.net/venneuler/.
Yan, Linlin. 2025. Ggvenn: Draw Venn Diagram by Ggplot2. https://yanlinlin82.github.io/ggvenn/.