References

Akyol, Turgut Yigit. 2019. RVenn: Set Operations for Many Sets. https://CRAN.R-project.org/package=RVenn.
Chang, Chang-Yu, Djordje Bajić, Jean C. C. Vila, Sylvie Estrela, and Alvaro Sanchez. 2023. “Emergent Coexistence in Multispecies Microbial Communities.” Science 381 (6655): 343–48. https://doi.org/10.1126/science.adg0727.
Chen, Hanbo. 2022. VennDiagram: Generate High-Resolution Venn and Euler Plots. https://CRAN.R-project.org/package=VennDiagram.
“Csho33/Bacteria-ID: Source Code and Demos for "Rapid Identification of Pathogenic Bacteria Using Raman Spectroscopy and Deep Learning".” n.d. https://github.com/csho33/bacteria-ID.
Dusa, Adrian. 2024. Venn: Draw Venn Diagrams. https://github.com/dusadrian/venn.
Gao, Chun-Hui, Hui Cao, Peng Cai, and Søren J. Sørensen. 2021. “The Initial Inoculation Ratio Regulates Bacterial Coculture Interactions and Metabolic Capacity.” ISME Journal 15 (1): 29–40. https://doi.org/10.1038/s41396-020-00751-7.
Gao, Chun-Hui, Hui Cao, Feng Ju, Ke-Qing Xiao, Peng Cai, Yichao Wu, and Qiaoyun Huang. 2021. “Emergent Transcriptional Adaption Facilitates Convergent Succession Within a Synthetic Community.” ISME Communications 1 (1): 46. https://doi.org/10.1038/s43705-021-00049-5.
Gao, Chun-Hui, and Adrian Dusa. 2024. ggVennDiagram: A Ggplot2 Implement of Venn Diagram. https://github.com/gaospecial/ggVennDiagram.
Ho, Chi-Sing, Neal Jean, Catherine A. Hogan, Lena Blackmon, Stefanie S. Jeffrey, Mark Holodniy, Niaz Banaei, Amr A. E. Saleh, Stefano Ermon, and Jennifer Dionne. 2019. “Rapid Identification of Pathogenic Bacteria Using Raman Spectroscopy and Deep Learning.” Nature Communications 10 (1): 4927. https://doi.org/10.1038/s41467-019-12898-9.
Knuth, Donald E. 1984. “Literate Programming.” Comput. J. 27 (2): 97–111. https://doi.org/10.1093/comjnl/27.2.97.
Larsson, Johan. 2024. Eulerr: Area-Proportional Euler and Venn Diagrams with Ellipses. https://github.com/jolars/eulerr.
Warnes, Gregory R., Ben Bolker, Lodewijk Bonebakker, Robert Gentleman, Wolfgang Huber, Andy Liaw, Thomas Lumley, et al. 2024. Gplots: Various r Programming Tools for Plotting Data. https://github.com/talgalili/gplots.
Wilkinson, Lee. 2024. Venneuler: Venn and Euler Diagrams. https://www.rforge.net/venneuler/.
Yan, Linlin. 2025. Ggvenn: Draw Venn Diagram by Ggplot2. https://yanlinlin82.github.io/ggvenn/.